PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g043551m
Common NameCISIN_1g043551mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 409aa    MW: 45539.8 Da    PI: 8.6345
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g043551mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-1271127155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  orange1.1g043551m  71 SKYRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 127
                        89*******************88887786625555.********************98 PP
2AP245.71.6e-14167215455
                AP2   4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +GV+ ++ + rW+A+I   +   g +k+ +lg++gt eeAa a++ a+ + +g
  orange1.1g043551m 167 RGVSKHHHNRRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEHRG 215
                        8**************99966...3.6**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-971127IPR001471AP2/ERF domain
CDDcd000181.90E-1871137No hitNo description
SuperFamilySSF541719.15E-1571137IPR016177DNA-binding domain
SMARTSM003806.9E-1972141IPR001471AP2/ERF domain
PROSITE profilePS5103218.472135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1272136IPR001471AP2/ERF domain
PRINTSPR003673.0E-57384IPR001471AP2/ERF domain
PROSITE profilePS5103215.343165223IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-15166225IPR016177DNA-binding domain
PfamPF008475.2E-10167213IPR001471AP2/ERF domain
CDDcd000182.49E-19167225No hitNo description
SMARTSM003803.4E-19167229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-14167223IPR001471AP2/ERF domain
PRINTSPR003673.0E-5205225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MENGAVKSGG RGGDMEAVLV PACIINKRRR RERDPSLGIG FNNVNQQVEQ QADQAAAATT  60
AAAATTVKRS SKYRGVSRHR WTGRYEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL  120
AALKYWGTST FTNFPVSEYE KEIEIMKTVT REEYLATLRR RSSGFSRGVS KHHHNRRWEA  180
RIGRVFGNKY LYLGTYGTQE EAAHAYDIAA IEHRGINAVT NFDISTYIRW LKPAAGGNSH  240
NPAFQEPKPI LEYSPPTSSL LSNHILTEGH QITDISIFND SNPFPLQDQD IPKKQDSFQA  300
NIKSSLPFSP CTKSSSSSPT ALSLLLRSSV FKELVEKNPN NSAEVNIEEN DTKNGPKIGS  360
KNEVEETLYD EFVINNPVQY ICPSSKICVS FLSSGRTEAL DFNCSMAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104PTQRKKGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483228.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X2
TrEMBLA0A067H5420.0A0A067H542_CITSI; Uncharacterized protein
STRINGVIT_14s0108g00050.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-68AP2 family protein