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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g043551m | ||||||||
Common Name | CISIN_1g043551mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | AP2 | ||||||||
Protein Properties | Length: 409aa MW: 45539.8 Da PI: 8.6345 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.6 | 1.3e-12 | 71 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g orange1.1g043551m 71 SKYRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 127 89*******************88887786625555.********************98 PP | |||||||
2 | AP2 | 45.7 | 1.6e-14 | 167 | 215 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GV+ ++ + rW+A+I + g +k+ +lg++gt eeAa a++ a+ + +g orange1.1g043551m 167 RGVSKHHHNRRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEHRG 215 8**************99966...3.6**********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.0E-9 | 71 | 127 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-18 | 71 | 137 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-15 | 71 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.9E-19 | 72 | 141 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.4 | 72 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 72 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-5 | 73 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.343 | 165 | 223 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-15 | 166 | 225 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.2E-10 | 167 | 213 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.49E-19 | 167 | 225 | No hit | No description |
SMART | SM00380 | 3.4E-19 | 167 | 229 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-14 | 167 | 223 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-5 | 205 | 225 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MENGAVKSGG RGGDMEAVLV PACIINKRRR RERDPSLGIG FNNVNQQVEQ QADQAAAATT 60 AAAATTVKRS SKYRGVSRHR WTGRYEAHLW DKGSWNPTQR KKGKQGAYDE EESAARAYDL 120 AALKYWGTST FTNFPVSEYE KEIEIMKTVT REEYLATLRR RSSGFSRGVS KHHHNRRWEA 180 RIGRVFGNKY LYLGTYGTQE EAAHAYDIAA IEHRGINAVT NFDISTYIRW LKPAAGGNSH 240 NPAFQEPKPI LEYSPPTSSL LSNHILTEGH QITDISIFND SNPFPLQDQD IPKKQDSFQA 300 NIKSSLPFSP CTKSSSSSPT ALSLLLRSSV FKELVEKNPN NSAEVNIEEN DTKNGPKIGS 360 KNEVEETLYD EFVINNPVQY ICPSSKICVS FLSSGRTEAL DFNCSMAL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 104 | PTQRKKGKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006483228.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
TrEMBL | A0A067H542 | 0.0 | A0A067H542_CITSI; Uncharacterized protein | ||||
STRING | VIT_14s0108g00050.t01 | 1e-136 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-68 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g043551m |